Wednesday, July 25, 2007

Flux balance Analysis(FBA) under linux

Considering you may find this page by google. I announce here my Software for FBA and MetaTOOL under frame of gtk.

Currently, the features are listed as following,
1. interface for linear programming
2. read reaction file in plain text
3. build model by hand in the form of work sheet
4. Layout the model and highlight the flux
i, generate network from model
ii, spring algorithm for layout
iii, highlight the modes and futile cycle
5. MetaTOOL
i, Output MetaTOOL input from FBA model
ii, run MetaTOOL
6. Other our utility unpublished for my poor English skills.
7. MOMA
8. Phaseplane
9. viability
10. subset of enzymes
11. Erase futile cycle

Go with a library handing FBA.

If you are interested, leave message here. I will read it some time.